Workflows, workflows everywhere
Learning why reproducibility, portability, and scalability matter.
Building workflows is where everything started.
My first pipeline was insertseq, I started the development of this during my master's thesis, and we ended up publishing.
The pipeline performs the analysis of insertional mutagenesis experiments.
Later, we developed nf-core/crisprseq, which I am author and maintainer of.
This pipeline performs the analysis of almost all CRISPR-Cas experiments (targeted and screening) and is used by many researchers around the world.
I also contribute to several other nf-core pipelines by reviewing code, improving modules,
and helping ensure compatibility with evolving nf-core and Nextflow standards.
⚙️ Some technical aspects:
- Pipelines built using Nextflow DSL2
- They are modular, using shared nf-core modules and subworkflows
- nf-core pipelines are tested with GitHub Actions